JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF3_chr6_63630802_63731011	0/0	t0075	12679	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0076	12676	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0077	12668	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0078	12679	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0079	12673	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0080	12682	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0081	12679	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0082	12673	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0083	12682	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0084	12685	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0085	12675	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0086	12678	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF5A_chr22_41454717_41473692	0/0	t0001	723	152	26	29	75	7	15	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0002	724	80	19	3	50	2	6	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0003	722	45	1	25	9	2	8	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/1	t0004	722	40	12	2	18	1	6	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0005	723	21	11	3	7	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0006	721	18	8	1	9	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	1/0	t0007	721	14	1	3	5	0	4	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0008	724	4	1	1	2	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0009	723	4	0	0	4	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0010	721	3	1	0	2	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0011	721	3	2	1	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0012	721	3	2	0	1	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0013	723	3	3	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0014	723	2	0	2	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0015	722	2	2	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0016	724	2	2	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0017	721	2	2	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0018	721	1	1	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0019	722	1	1	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0020	723	1	0	0	1	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0021	722	1	0	0	0	0	1	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0022	721	1	0	1	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0023	732	1	0	0	1	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0024	721	1	0	0	1	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0025	724	1	0	0	1	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0026	723	1	0	1	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF5A_chr22_41454717_41473692	0/0	t0027	721	1	1	0	0	0	0	copy fasta	PHF5A	chr22	41454717	41473692
PHF6_chrX_134368312_134433790	0/0	t0001	3335	102	20	19	50	1	12	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	1/0	t0002	3333	97	15	17	48	4	12	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/1	t0003	3334	35	2	2	27	2	1	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0004	3334	32	20	10	0	0	2	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0005	3333	12	0	2	7	2	1	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0006	3334	2	0	0	2	0	0	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0007	3333	1	0	0	1	0	0	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0008	3334	1	1	0	0	0	0	copy fasta	PHF6	chrX	134368312	134433790
PHF6_chrX_134368312_134433790	0/0	t0009	3333	1	0	1	0	0	0	copy fasta	PHF6	chrX	134368312	134433790
PHF7_chr3_52405660_52428641	1/1	t0001	982	347	83	78	141	12	31	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	t0002	982	6	0	0	5	0	1	copy fasta	PHF7	chr3	52405660	52428641