JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF7_chr3_52405660_52428641	0/0	t0003	982	4	0	0	4	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	t0004	982	2	2	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	t0005	982	1	0	0	1	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	t0006	982	1	1	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	t0007	982	1	0	0	1	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF8_chrX_53931680_54049473	1/0	t0001	3283	131	23	25	63	5	14	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/1	t0002	3283	23	16	4	0	0	2	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0003	3283	19	15	4	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0004	3283	4	4	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0005	3283	2	2	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0006	3283	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0007	3283	1	1	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0008	3282	1	0	0	0	0	1	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0009	3283	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0010	3283	1	1	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0011	3278	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	t0012	3283	1	0	0	0	0	1	copy fasta	PHF8	chrX	53931680	54049473
PHGDH_chr1_119706934_119749215	1/1	t0001	265	399	93	74	168	14	48	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	t0002	265	1	1	0	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGR1_chr15_40346033_40361434	1/1	t0001	188	395	79	58	201	14	41	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	t0002	188	40	13	14	6	4	3	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	t0003	188	1	0	0	1	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHIP_chr6_78929419_79083254	0/1	t0001	6462	61	5	12	32	1	10	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0002	6459	34	8	4	18	3	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0003	6463	30	8	5	12	1	4	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0004	6459	23	1	5	11	2	4	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0005	6463	22	2	3	13	0	4	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0006	6461	12	0	9	0	0	3	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0007	6462	11	5	3	0	3	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0008	6464	9	4	0	4	0	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0009	6460	7	2	0	3	1	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0010	6460	7	0	0	6	0	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0011	6463	6	6	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0012	6463	6	6	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0013	6461	5	5	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0014	6465	4	1	1	0	0	2	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0015	6464	4	1	1	0	0	2	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0016	6472	3	0	0	3	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0017	6464	3	3	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0018	6464	3	3	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0019	6463	3	3	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0020	6462	3	0	0	3	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0021	6463	3	3	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0022	6459	3	0	0	3	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0023	6465	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0024	6466	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0025	6463	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0026	6463	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0027	6465	2	0	1	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0028	6463	2	0	2	0	0	0	copy fasta	PHIP	chr6	78929419	79083254