JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHIP_chr6_78929419_79083254	0/0	t0029	6463	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0030	6459	2	2	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0031	6458	2	0	1	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0032	6464	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0033	6464	1	0	0	0	1	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0034	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0035	6463	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0036	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0037	6462	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0038	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0039	6462	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0040	6462	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0041	6462	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0042	6462	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0043	6458	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0044	6461	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0045	6462	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0046	6464	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0047	6464	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0048	6464	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0049	6464	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0050	6463	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0051	6464	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0052	6461	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0053	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0054	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0055	6463	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0056	6465	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0057	6462	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0058	6464	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0059	6459	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0060	6459	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0061	6459	1	0	0	0	0	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0062	6461	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0063	6461	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	1/0	t0064	6461	1	0	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0065	6460	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0066	6459	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0067	6458	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0068	6459	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	t0069	6448	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHKA1_chrX_72573814_72719306	1/1	t0001	2615	149	41	30	52	5	19	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0002	2613	47	0	0	41	0	6	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0003	2617	22	20	1	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0004	2617	5	5	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0005	2615	3	0	2	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0006	2615	2	0	2	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0007	2615	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0008	2615	1	0	0	0	0	1	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0009	2619	1	1	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306