Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG16L2_chr11_72809411_72834635	0/1	t0001	285	242	31	43	128	10	29	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	1/0	t0002	281	193	61	38	69	8	16	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	t0003	281	2	2	0	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	t0004	285	1	0	0	1	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	t0005	285	1	0	1	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	t0006	285	1	0	0	0	0	1	copy fasta	ATG16L2	chr11	72809411	72834635
ATG2A_chr11_64889546_64922209	1/1	t0001	502	352	70	63	165	14	38	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0002	502	13	12	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0003	502	3	3	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0004	502	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0005	461	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0006	502	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	t0007	502	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2B_chr14_96274195_96368341	0/0	t0001	6935	66	25	15	16	2	8	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/1	t0002	6935	47	1	16	22	2	5	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	1/0	t0003	6926	38	1	13	19	3	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0004	6935	34	2	3	23	0	6	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0005	6935	33	4	8	19	1	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0006	6935	22	12	5	0	1	4	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0007	6935	10	0	0	10	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0008	6935	9	9	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0009	6931	6	5	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0010	6925	6	0	0	3	0	3	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0011	6926	5	0	1	0	0	4	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0012	6931	5	5	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0013	6925	5	0	0	5	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0014	6935	4	0	0	4	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0015	6935	4	0	0	4	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0016	6926	3	0	0	3	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0017	6939	3	0	0	3	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0018	6935	3	0	0	3	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0019	6936	2	1	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0020	6926	2	0	0	2	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0021	6931	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0022	6935	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0023	6931	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0024	6935	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0025	6935	2	0	0	2	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0026	6931	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0027	6927	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0028	6936	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0029	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0030	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0031	6926	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0032	6926	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0033	6926	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0034	6926	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0035	6931	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0036	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0037	6935	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341