Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG2B_chr14_96274195_96368341	0/0	t0038	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0039	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0040	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0041	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0042	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0043	6935	1	0	0	0	1	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0044	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0045	6931	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0046	6931	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0047	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0048	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0049	6925	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0050	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0051	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0052	6926	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0053	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0054	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0055	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0056	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0057	6935	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0058	6935	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0059	6935	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0060	6935	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0061	6935	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0062	6935	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	t0063	6929	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG3_chr3_112527510_112566962	0/1	t0001	624	345	68	59	168	14	35	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	1/0	t0002	624	22	14	0	4	0	3	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	t0003	624	4	3	1	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	t0004	624	2	2	0	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	t0005	624	1	0	0	1	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	t0006	624	1	1	0	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	t0007	624	1	0	0	1	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG4A_chrX_108086778_108159671	1/1	t0001	1009	220	57	43	79	12	27	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	t0002	1009	23	8	4	10	0	1	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	t0003	1009	4	4	0	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	t0004	1009	1	0	0	0	1	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	t0005	1009	1	1	0	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4B_chr2_241632693_241678857	0/0	t0001	1615	89	11	37	28	4	9	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0002	1612	74	9	4	45	2	14	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0003	1618	49	9	7	25	2	6	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0004	1615	46	11	6	25	3	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0005	1618	37	0	3	32	2	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0006	1611	17	16	1	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0007	1615	12	1	1	7	2	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0008	1615	12	0	0	12	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0009	1611	8	0	0	8	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0010	1615	8	8	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/1	t0011	1615	5	3	1	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	1/0	t0012	1616	5	1	0	0	0	3	copy fasta	ATG4B	chr2	241632693	241678857