JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITX1_chr5_135022734_135039228	0/0	t0017	1383	3	0	2	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0018	1383	3	2	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0019	1380	3	3	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0020	1393	2	0	2	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0021	1384	2	1	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0022	1384	2	2	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0023	1383	2	2	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0024	1381	2	2	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0025	1381	2	1	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0026	1380	2	0	0	2	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0027	1387	1	1	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0028	1394	1	0	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0029	1395	1	0	0	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0030	1395	1	0	0	0	0	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0031	1394	1	0	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0032	1392	1	0	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0033	1381	1	0	0	0	0	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0034	1383	1	1	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0035	1382	1	0	0	0	0	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0036	1382	1	1	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0037	1381	1	0	0	0	0	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0038	1381	1	0	0	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0039	1380	1	0	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0040	1381	1	0	0	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0041	1388	1	0	0	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX2_chr4_110612423_110628077	0/1	t0001	1319	252	47	49	124	15	16	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0002	1318	110	9	17	65	3	16	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0003	1318	24	20	4	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	1/0	t0004	1320	12	2	1	3	0	5	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0005	1319	5	5	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0006	1319	4	3	1	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0007	1319	3	0	0	3	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0008	1318	3	3	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0009	1318	2	0	0	2	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0010	1318	2	2	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0011	1319	1	1	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0012	1318	1	0	0	0	0	1	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0013	1318	1	1	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0014	1319	1	0	0	1	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	t0015	1319	1	1	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX3_chr10_102225189_102246512	1/1	t0001	518	403	92	75	188	14	32	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	t0002	518	3	3	0	0	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	t0003	518	1	0	0	1	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	t0004	518	1	0	0	1	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	t0005	518	1	0	1	0	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	t0006	518	1	1	0	0	0	0	copy fasta	PITX3	chr10	102225189	102246512
PIWIL1_chr12_130332887_130377637	0/0	t0001	1288	89	8	26	47	5	3	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0002	1302	59	6	8	40	2	3	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0003	1301	35	2	4	22	1	6	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0004	1300	33	4	7	18	0	4	copy fasta	PIWIL1	chr12	130332887	130377637