JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G7_chr6_46699201_46740375	0/0	t0002	574	60	15	19	14	1	11	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0003	572	48	8	1	35	1	3	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0004	574	48	0	7	33	2	6	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0005	578	20	1	7	4	3	5	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0006	572	18	17	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0007	578	12	3	2	4	3	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0008	580	10	0	4	4	0	2	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0009	576	9	0	3	1	0	5	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0010	574	8	7	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0011	594	8	0	0	8	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	1/0	t0012	590	7	0	5	0	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0013	596	7	0	1	5	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/1	t0014	596	6	1	4	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0015	578	5	0	2	2	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0016	580	4	0	1	2	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0017	592	4	0	3	0	1	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0018	594	4	0	2	0	2	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0019	576	3	1	1	0	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0020	584	3	3	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0021	576	3	1	0	1	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0022	582	3	0	0	3	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0023	578	2	0	0	2	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0024	580	2	0	2	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0025	590	2	2	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0026	590	2	2	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0027	598	2	0	0	2	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0028	600	2	0	2	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0029	584	1	0	1	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0030	584	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0031	562	1	0	1	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0032	574	1	0	0	0	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0033	580	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0034	606	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0035	570	1	0	1	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0036	590	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0037	590	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0038	592	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0039	596	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0040	598	1	0	0	0	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0041	602	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0042	604	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0043	578	1	0	0	0	0	1	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	t0044	602	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2R1_chr2_159927006_160067615	0/0	t0001	9978	37	0	4	31	0	2	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0002	9977	20	0	2	15	2	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0003	9976	15	1	8	2	1	3	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/1	t0004	9977	11	0	5	1	3	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0005	9977	8	1	5	1	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0006	9991	8	1	0	7	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0007	9976	8	3	0	5	0	0	copy fasta	PLA2R1	chr2	159927006	160067615