JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2R1_chr2_159927006_160067615	0/0	t0008	9976	7	0	3	4	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0009	9984	7	7	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0010	9983	6	0	2	0	1	3	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0011	9990	6	0	0	3	0	3	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0012	9983	5	5	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0013	9978	5	0	0	5	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0014	9978	5	5	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0015	9986	4	4	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0016	9998	4	0	0	4	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0017	9996	4	0	0	4	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0018	9992	4	1	0	3	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0019	9990	4	0	0	4	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0020	9977	4	0	0	4	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0021	9999	3	3	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0022	9990	3	0	0	3	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0023	9977	3	0	0	3	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0024	9990	3	0	0	3	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0025	9978	3	0	1	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0026	9977	3	3	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0027	9997	3	0	0	3	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0028	9992	3	3	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0029	9977	3	0	0	0	0	3	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0030	9984	3	3	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0031	10000	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0032	9972	2	0	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0033	9979	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0034	9970	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0035	9982	2	0	1	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0036	10011	2	0	1	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0037	10009	2	0	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0038	10008	2	0	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0039	10004	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0040	9999	2	0	0	0	0	2	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0041	10006	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0042	9977	2	0	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0043	9984	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0044	9977	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0045	9998	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0046	9989	2	0	0	1	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0047	9985	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0048	9975	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0049	9983	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0050	9984	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0051	9971	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0052	9997	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0053	9995	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0054	10006	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0055	10001	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0056	9998	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0057	9984	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615