JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2R1_chr2_159927006_160067615	0/0	t0108	9977	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0109	9978	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0110	9976	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0111	9977	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0112	9978	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0113	9977	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0114	9974	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0115	9977	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0116	9977	1	0	0	0	1	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0117	9984	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0118	9995	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0119	10004	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0120	10011	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0121	10008	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0122	10004	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0123	10004	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0124	10003	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0125	9998	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0126	9983	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0127	9984	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0128	9984	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0129	9990	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0130	9978	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0131	9978	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0132	9983	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0133	9979	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0134	9973	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0135	10360	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	t0136	9995	1	0	0	0	1	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLAAT1_chr3_193236222_193275855	1/1	t0001	463	388	82	74	178	8	44	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	t0002	463	3	0	0	3	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	t0003	463	3	3	0	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	t0004	463	2	0	0	2	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	t0005	463	1	0	0	1	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	t0006	463	1	1	0	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT2_chr11_63547770_63568379	1/1	t0001	250	376	95	80	147	14	38	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	t0002	250	1	0	0	1	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	t0003	250	1	1	0	0	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT3_chr11_63569462_63619433	1/1	t0001	587	180	47	37	63	8	23	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0002	587	146	22	24	77	8	15	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0003	587	11	11	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0004	587	4	3	1	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0005	585	4	4	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0006	587	3	3	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0007	587	3	3	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	t0008	587	1	1	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT4_chr11_63531808_63551458	1/1	t0001	264	312	81	72	111	16	30	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT4_chr11_63531808_63551458	0/0	t0002	264	9	9	0	0	0	0	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT4_chr11_63531808_63551458	0/0	t0003	264	1	0	0	1	0	0	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT5_chr11_63456404_63496167	1/1	t0001	2233	240	44	41	110	10	33	copy fasta	PLAAT5	chr11	63456404	63496167