JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLI_chr18_54264517_54303234	0/0	t0021	3797	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0022	3789	1	0	0	0	0	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0023	3796	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0024	3796	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0025	3796	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0026	3797	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0027	3797	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0028	3797	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0029	3797	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0030	3798	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0031	3798	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0032	3798	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0033	3798	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0034	3798	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0035	3798	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0036	3798	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0037	3798	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0038	3798	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0039	3798	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0040	3799	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0041	3799	1	0	0	0	0	1	copy fasta	POLI	chr18	54264517	54303234
POLK_chr5_75506891_75614991	0/1	t0001	12007	62	2	13	40	1	5	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0002	12016	22	0	3	15	0	4	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0003	12006	20	0	4	14	1	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0004	12006	16	0	0	14	0	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0005	12005	10	9	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0006	12016	9	0	0	9	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0007	12002	9	3	3	0	1	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0008	12004	8	7	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0009	12004	7	7	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0010	12008	6	0	0	6	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0011	12009	6	0	2	2	1	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0012	12005	6	0	0	6	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0013	12006	5	4	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0014	12008	5	0	4	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0015	12020	5	0	1	4	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0016	12000	5	0	0	5	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0017	12018	4	0	1	3	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0018	12014	4	0	0	3	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0019	12006	4	4	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0020	12004	4	4	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0021	12016	3	0	0	3	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0022	12018	3	1	2	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0023	12012	3	0	1	0	0	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0024	12003	3	0	1	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0025	12002	3	2	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0026	12010	3	2	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0027	12008	3	0	0	0	1	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0028	12006	2	1	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0029	12004	2	0	0	1	0	1	copy fasta	POLK	chr5	75506891	75614991