JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLK_chr5_75506891_75614991	0/0	t0030	12006	2	2	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0031	12013	2	2	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0032	12017	2	2	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0033	12016	2	1	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0034	12021	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0035	12019	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0036	12004	2	2	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0037	12005	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0038	12008	2	1	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0039	12005	2	1	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0040	12002	2	2	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0041	12007	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0042	12010	2	0	2	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0043	12012	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0044	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0045	12007	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0046	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0047	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0048	12007	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0049	12005	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0050	12004	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0051	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0052	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0053	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0054	12010	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0055	12009	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0056	12006	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0057	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0058	12005	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0059	12009	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0060	12006	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0061	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0062	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0063	12006	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0064	12019	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0065	12008	1	0	0	0	1	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0066	12002	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0067	12019	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0068	12007	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0069	12013	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0070	12020	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0071	12016	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0072	12021	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0073	12018	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0074	12018	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0075	12018	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0076	12016	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0077	12016	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0078	12014	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0079	12012	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991