JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLK_chr5_75506891_75614991	0/0	t0080	12020	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0081	12016	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0082	12010	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0083	12018	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0084	12017	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0085	12010	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0086	12006	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0087	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0088	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0089	12006	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	1/0	t0090	12011	1	0	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0091	12007	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0092	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0093	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0094	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0095	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0096	12009	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0097	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0098	11998	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0099	12011	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0100	12011	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0101	12002	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0102	12007	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0103	12007	1	0	0	0	1	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0104	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0105	12004	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0106	12004	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0107	12012	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0108	12012	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0109	12012	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0110	12016	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0111	12001	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0112	12016	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0113	12010	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0114	12008	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0115	12010	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0116	12012	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0117	12012	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0118	12011	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0119	12008	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0120	12006	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0121	12007	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0122	12006	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0123	12004	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0124	12009	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0125	12008	1	0	0	0	0	1	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0126	12009	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0127	12008	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0128	12016	1	0	0	0	1	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	t0129	12006	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991