JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLK_chr5_75506891_75614991	0/0	t0130	12006	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLL_chr10_101573882_101593257	1/0	t0001	1054	324	61	54	159	9	40	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0002	1054	39	7	15	7	6	4	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/1	t0003	1054	21	15	2	1	2	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0004	1054	2	0	0	2	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0005	1054	1	0	1	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0006	1036	1	1	0	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0007	1054	1	0	0	0	1	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0008	1054	1	0	0	0	0	1	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0009	1054	1	1	0	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0010	1054	1	1	0	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0011	1054	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	t0012	1054	1	0	0	0	0	1	copy fasta	POLL	chr10	101573882	101593257
POLM_chr7_44067062_44087530	1/0	t0001	1322	254	30	52	132	8	31	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/1	t0002	1322	67	18	16	23	4	5	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0003	1322	18	2	8	1	2	5	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0004	1322	18	18	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0005	1322	10	10	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0006	1322	6	6	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0007	1322	4	0	0	4	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0008	1322	4	0	0	4	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0009	1322	2	2	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0010	1322	2	2	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0011	1322	2	2	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0012	1322	1	0	1	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0013	1322	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0014	1322	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0015	1322	1	0	1	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0016	1322	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0017	1322	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	t0018	1322	1	0	0	0	0	1	copy fasta	POLM	chr7	44067062	44087530
POLN_chr4_2066918_2247121	1/1	t0001	551	173	63	33	67	1	7	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	t0002	551	18	7	3	5	1	2	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	t0003	551	2	2	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	t0004	551	1	0	0	0	0	1	copy fasta	POLN	chr4	2066918	2247121
POLQ_chr3_121426431_121550988	0/0	t0001	985	298	75	67	109	16	31	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0002	985	6	0	5	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0003	985	4	4	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0004	985	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0005	985	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0006	985	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0007	985	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0008	985	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	t0009	985	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLR1A_chr2_86015216_86110886	1/0	t0001	7318	68	1	18	40	0	8	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0002	7318	42	3	3	34	2	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/1	t0003	7317	28	2	11	9	1	4	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0004	7316	27	8	5	5	2	7	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0005	7319	20	19	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0006	7318	16	0	0	16	0	0	copy fasta	POLR1A	chr2	86015216	86110886