JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU2AF1_chr11_111347255_111384275	0/0	t0058	2105	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0059	2109	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0060	2077	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0061	2000	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0062	2004	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0063	2056	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0064	2048	1	0	0	0	0	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0065	2069	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0066	2073	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0067	2117	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF2_chr11_111240725_111291401	0/1	t0001	477	140	40	35	40	6	18	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	t0002	477	122	17	20	74	3	8	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	1/0	t0003	477	72	27	11	26	3	4	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	t0004	477	43	5	0	37	0	1	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	t0005	477	1	0	0	1	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	t0006	477	1	0	0	0	0	1	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	t0007	477	1	1	0	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF3_chr11_111293546_111313735	1/1	t0001	335	282	70	48	134	10	18	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	t0002	335	172	20	34	90	4	24	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	t0003	335	6	0	0	6	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	t0004	335	5	5	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	t0005	335	3	3	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2F1_chr1_167215886_167432340	0/0	t0001	11540	64	3	11	39	3	8	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0002	11543	48	3	9	20	5	11	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/1	t0003	11539	36	2	6	21	5	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0004	11543	7	0	0	7	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0005	11540	7	7	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0006	11543	7	7	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0007	11540	6	1	4	0	0	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0008	11540	6	0	0	6	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0009	11540	5	0	2	3	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0010	11542	4	3	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0011	11539	4	0	0	4	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0012	11540	4	4	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0013	11540	3	3	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0014	11540	3	0	0	3	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0015	11539	3	0	0	1	1	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0016	11544	3	3	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0017	11542	3	3	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0018	11540	3	3	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0019	11540	3	2	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0020	11539	3	3	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0021	11544	2	2	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0022	11540	2	0	0	2	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0023	11540	2	0	0	2	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0024	11543	2	2	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0025	11535	2	2	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0026	11539	2	2	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0027	11539	2	1	0	0	1	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0028	11543	2	0	2	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340