JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU2F1_chr1_167215886_167432340	0/0	t0029	11539	2	2	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0030	11539	2	1	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0031	11542	2	0	0	0	0	2	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0032	11539	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0033	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0034	11542	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0035	11544	1	0	0	0	0	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0036	11544	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0037	11543	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0038	11541	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0039	11540	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0040	11540	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0041	11540	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0042	11541	1	0	0	0	0	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0043	11540	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0044	11540	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0045	11542	1	0	0	0	0	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0046	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0047	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0048	11543	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0049	11540	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	1/0	t0050	11543	1	0	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0051	11543	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0052	11541	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0053	11543	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0054	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0055	11542	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0056	11538	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0057	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0058	11543	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0059	11544	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0060	11541	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0061	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0062	11539	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0063	11542	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0064	11536	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0065	11539	1	0	0	0	1	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0066	11539	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0067	11539	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0068	11540	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0069	11535	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0070	11539	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0071	11538	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0072	11538	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0073	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0074	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0075	11540	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0076	11539	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0077	11540	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	t0078	11540	1	0	1	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340