JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU2F1_chr1_167215886_167432340	0/0	t0079	11540	1	0	0	0	0	1	copy fasta	POU2F1	chr1	167215886	167432340
POU2F2_chr19_42081110_42137446	1/1	t0001	5183	49	5	11	19	1	11	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0002	5183	20	19	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0003	5185	16	1	0	7	0	8	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0004	5182	16	0	2	5	1	8	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0005	5183	12	11	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0006	5185	8	8	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0007	5184	7	0	5	2	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0008	5185	4	4	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0009	5193	3	2	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0010	5184	3	3	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0011	5183	3	0	1	1	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0012	5184	2	1	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0013	5183	2	0	1	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0014	5185	2	0	1	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0015	5187	2	2	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0016	5183	2	2	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0017	5188	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0018	5184	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0019	5187	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0020	5186	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0021	5182	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0022	5182	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0023	5184	1	0	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0024	5184	1	0	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0025	5182	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0026	5183	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0027	5182	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0028	5182	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0029	5183	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0030	5184	1	0	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0031	5185	1	1	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0032	5188	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0033	5187	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0034	5183	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0035	5183	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0036	5183	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0037	5182	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0038	5182	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0039	5182	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0040	5185	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	t0041	5184	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F3_chr11_120235140_120324945	1/0	t0001	1758	134	24	25	72	1	11	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/1	t0002	1758	40	11	20	4	0	4	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0003	1758	32	9	11	9	0	3	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0004	1758	21	2	2	12	0	5	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0005	1758	15	15	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0006	1758	13	6	3	2	0	2	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0007	1759	12	0	0	4	0	8	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0008	1758	7	6	1	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945