JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAMEF18_chr1_13217695_13231154	0/0	t0005	686	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF19_chr1_13363431_13376947	1/1	t0001	684	377	89	67	160	17	42	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0002	684	61	1	1	51	1	7	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0003	684	2	2	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0004	684	2	2	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0005	684	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0006	684	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0007	684	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0008	684	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0009	684	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0010	684	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0011	684	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	t0012	684	1	0	0	0	0	1	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF1_chr1_12786397_12801628	1/0	t0001	736	152	42	44	47	5	13	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0002	736	115	4	22	73	3	13	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/1	t0003	736	56	6	9	30	2	8	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0004	736	13	13	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0005	736	7	6	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0006	736	6	6	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0007	736	5	5	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0008	736	4	0	0	4	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0009	736	3	0	0	0	0	3	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0010	709	3	0	1	1	1	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0011	736	2	0	0	2	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0012	736	2	0	0	1	0	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0013	736	2	0	0	0	1	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0014	736	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0015	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0016	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0017	736	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0018	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0019	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0020	736	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0021	736	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0022	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0023	736	1	0	0	0	0	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0024	736	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	t0025	736	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF20_chr1_13405450_13426328	1/1	t0001	170	441	93	74	204	18	50	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	t0002	170	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF25_chr1_13065774_13082884	0/0	t0001	483	100	7	25	55	3	10	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0002	483	21	12	0	7	0	2	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0003	483	12	0	0	12	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0004	483	6	0	4	2	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0005	483	3	2	0	0	1	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0006	483	2	0	0	2	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0007	483	2	2	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0008	349	2	1	1	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0009	484	1	0	0	0	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0010	484	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884