JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAMEF25_chr1_13065774_13082884	0/0	t0011	483	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0012	483	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0013	483	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0014	483	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0015	483	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	t0016	483	1	0	0	0	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF26_chr1_13143907_13161009	0/0	t0001	473	66	2	21	36	1	6	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0002	473	62	23	10	21	3	5	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/1	t0003	473	30	6	5	13	1	4	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0004	473	27	2	0	25	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0005	473	23	0	6	16	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0006	473	7	2	2	3	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0007	473	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0008	473	2	1	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0009	473	2	1	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0010	473	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0011	473	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0012	473	1	0	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0013	473	1	0	0	0	1	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0014	473	1	0	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0015	473	1	0	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0016	473	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	t0017	347	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF27_chr1_13044476_13061575	0/0	t0001	511	108	2	36	61	7	2	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	t0002	511	3	0	1	1	1	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	t0003	511	2	0	0	2	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	t0004	511	2	0	0	2	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	t0005	511	2	0	2	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	t0006	511	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF2_chr1_12852086_12866909	1/1	t0001	218	241	47	49	108	9	26	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0002	218	30	10	8	9	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0003	218	26	0	0	23	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0004	218	18	18	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0005	218	14	0	5	4	1	4	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0006	218	2	1	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0007	218	2	1	0	1	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0008	218	2	1	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0009	218	1	0	0	1	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0010	218	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	t0011	218	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF33_chr1_13298539_13313907	0/1	t0001	94	309	65	61	143	13	26	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0002	94	81	13	7	45	1	15	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0003	94	18	0	0	18	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0004	94	3	2	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0005	94	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0006	94	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0007	94	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0008	94	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0009	94	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	t0010	94	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907