JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM2_chr1_13695188_13830079	0/0	t0026	2123	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0027	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0028	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0029	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0030	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0031	2123	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM4_chr12_107727871_107766137	1/1	t0001	1777	196	83	29	54	6	22	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0002	1777	109	2	15	77	5	10	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0003	1774	57	1	18	25	3	10	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0004	1777	7	0	0	7	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0005	1777	6	0	0	6	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0006	1777	3	0	0	3	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0007	1777	3	1	0	0	0	2	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0008	1777	3	0	0	3	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0009	1777	2	0	0	2	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0010	1777	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0011	1777	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0012	1777	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	t0013	1777	1	1	0	0	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM5_chr4_120686915_120927726	0/1	t0001	3315	212	49	46	83	9	24	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0002	3307	26	1	7	17	1	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0003	3315	9	8	0	0	0	1	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0004	3315	8	0	0	8	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0005	3315	5	5	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0006	3315	5	0	2	0	2	1	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	1/0	t0007	3315	4	2	1	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0008	3315	4	0	0	4	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0009	3316	4	3	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0010	3315	3	3	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0011	3307	2	0	0	2	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0012	3315	2	2	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0013	3315	2	2	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0014	3315	2	0	0	2	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0015	3315	1	0	0	0	0	1	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0016	3295	1	0	0	0	0	1	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0017	3315	1	0	1	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0018	3315	1	0	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0019	3315	1	1	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0020	3315	1	1	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0021	3315	1	0	1	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0022	3315	1	0	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0023	3315	1	1	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	t0024	3315	1	0	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM6_chr5_123084241_123199266	1/0	t0001	7360	100	9	25	50	1	14	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0002	7361	19	4	12	0	0	3	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0003	7380	18	0	4	13	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0004	7360	12	0	0	12	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0005	7360	10	4	0	5	1	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0006	7361	6	6	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0007	7360	5	5	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266