JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM6_chr5_123084241_123199266	0/0	t0008	7360	5	0	0	5	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0009	7360	5	1	2	2	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0010	7360	5	0	4	0	1	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0011	7360	5	5	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0012	7361	4	4	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0013	7360	4	4	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0014	7359	4	2	1	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0015	7361	3	2	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0016	7360	3	0	1	2	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0017	7359	3	1	1	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0018	7359	3	3	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0019	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0020	7360	2	1	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0021	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0022	7361	2	1	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0023	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0024	7359	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0025	7361	2	0	2	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0026	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0027	7360	2	0	2	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0028	7359	2	0	0	2	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0029	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0030	7381	2	0	0	1	1	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0031	7380	2	0	0	2	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0032	7381	2	0	0	0	0	2	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0033	7380	2	0	2	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0034	7360	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0035	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0036	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0037	7360	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0038	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0039	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0040	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0041	7360	1	0	0	0	1	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0042	7360	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0043	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0044	7361	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0045	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0046	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0047	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0048	7361	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0049	7361	1	0	0	0	1	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0050	7361	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0051	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0052	7361	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0053	7360	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0054	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0055	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0056	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0057	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266