JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM6_chr5_123084241_123199266	0/0	t0058	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0059	7360	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0060	7360	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0061	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0062	7360	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0063	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0064	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0065	7361	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0066	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0067	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0068	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0069	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0070	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0071	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0072	7359	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0073	7359	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0074	7359	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0075	7359	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0076	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/1	t0077	7359	1	0	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0078	7359	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0079	7359	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0080	7359	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0081	7349	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0082	7359	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0083	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0084	7360	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0085	7380	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0086	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0087	7380	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0088	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0089	7380	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0090	7380	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0091	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0092	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0093	7380	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0094	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0095	7380	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0096	7379	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0097	7379	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0098	7379	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0099	7380	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	t0100	7360	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM7_chr16_90051566_90082331	0/1	t0001	1915	106	14	34	27	9	21	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0002	1915	95	1	21	66	2	5	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0003	1915	66	12	6	32	1	15	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0004	1915	29	21	3	1	0	4	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0005	1915	11	11	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0006	1915	8	6	2	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0007	1915	7	0	0	6	1	0	copy fasta	PRDM7	chr16	90051566	90082331