JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRIMA1_chr14_93713298_93793485	0/0	t0029	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0030	3254	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0031	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0032	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0033	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0034	3254	1	0	0	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0035	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0036	3254	1	0	0	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMPOL_chr4_184644738_184699952	1/1	t0001	482	308	73	66	121	12	34	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	t0002	482	14	14	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	t0003	482	3	3	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	t0004	482	2	2	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	t0005	482	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRKAA1_chr5_40754389_40803374	1/1	t0001	3575	319	63	67	132	16	39	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0002	3575	28	4	3	18	0	3	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0003	3575	7	7	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0004	3575	5	5	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0005	3575	5	0	0	5	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0006	3575	4	3	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0007	3575	4	0	0	4	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0008	3574	3	2	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0009	3575	3	3	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0010	3575	3	0	3	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0011	3575	2	0	0	2	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0012	3575	2	2	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0013	3574	2	1	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0014	3575	2	0	0	2	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0015	3575	1	0	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0016	3575	1	0	0	1	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0017	3565	1	0	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0018	3575	1	0	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0019	3575	1	0	0	1	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0020	3575	1	1	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0021	3575	1	1	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0022	3575	1	0	0	1	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0023	3575	1	0	0	1	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0024	3575	1	0	0	1	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0025	3575	1	0	1	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0026	3575	1	1	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	t0027	3574	1	1	0	0	0	0	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA2_chr1_56640314_56720335	0/0	t0001	7697	15	0	9	4	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0002	7698	14	0	0	13	1	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0003	7698	14	1	1	10	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0004	7698	9	1	1	6	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0005	7697	8	0	0	6	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0006	7697	7	0	1	5	1	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	1/0	t0007	7697	7	0	3	1	2	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0008	7697	7	0	0	7	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0009	7697	7	0	3	1	0	3	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0010	7696	7	0	0	5	1	1	copy fasta	PRKAA2	chr1	56640314	56720335