JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAA2_chr1_56640314_56720335	0/0	t0011	7698	7	2	0	5	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/1	t0012	7696	6	0	2	1	1	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0013	7695	6	0	6	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0014	7698	6	0	0	5	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0015	7698	5	0	0	4	1	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0016	7697	5	0	0	5	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0017	7697	5	0	1	4	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0018	7696	5	0	1	1	3	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0019	7697	5	5	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0020	7698	4	0	0	2	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0021	7698	4	0	0	3	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0022	7697	4	0	2	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0023	7698	4	0	0	4	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0024	7698	4	2	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0025	7698	4	0	0	4	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0026	7701	4	4	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0027	7702	3	2	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0028	7698	3	3	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0029	7698	3	0	0	3	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0030	7698	3	0	1	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0031	7698	3	0	0	3	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0032	7698	3	1	0	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0033	7696	3	0	0	3	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0034	7699	3	0	0	3	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0035	7696	3	0	1	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0036	7697	3	2	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0037	7698	3	0	0	3	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0038	7698	3	0	0	1	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0039	7698	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0040	7697	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0041	7698	2	0	0	0	0	2	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0042	7697	2	0	1	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0043	7696	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0044	7695	2	1	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0045	7699	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0046	7697	2	1	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0047	7696	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0048	7697	2	0	0	0	1	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0049	7698	2	1	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0050	7696	2	0	0	0	1	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0051	7698	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0052	7699	2	1	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0053	7698	2	1	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0054	7697	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0055	7696	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0056	7698	2	0	0	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0057	7696	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0058	7698	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0059	7696	2	0	2	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0060	7696	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335