JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAA2_chr1_56640314_56720335	0/0	t0061	7698	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0062	7697	2	0	1	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0063	7697	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0064	7695	2	1	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0065	7702	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0066	7695	2	0	2	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0067	7698	2	1	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0068	7698	2	2	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0069	7698	2	0	0	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0070	7698	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0071	7697	2	0	0	2	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0072	7703	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0073	7702	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0074	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0075	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0076	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0077	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0078	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0079	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0080	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0081	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0082	7694	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0083	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0084	7698	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0085	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0086	7726	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0087	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0088	7697	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0089	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0090	7695	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0091	7697	1	0	0	0	1	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0092	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0093	7700	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0094	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0095	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0096	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0097	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0098	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0099	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0100	7697	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0101	7694	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0102	7700	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0103	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0104	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0105	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0106	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0107	7698	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0108	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0109	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0110	7694	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335