JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAA2_chr1_56640314_56720335	0/0	t0161	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0162	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0163	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0164	7699	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0165	7696	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0166	7696	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0167	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0168	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0169	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0170	7695	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0171	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0172	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0173	7698	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0174	7703	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0175	7702	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0176	7703	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0177	7701	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0178	7700	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0179	7697	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0180	7695	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0181	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0182	7696	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0183	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0184	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0185	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0186	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0187	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0188	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0189	7696	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0190	7697	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0191	7698	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0192	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0193	7699	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0194	7698	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0195	7695	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0196	7697	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0197	7700	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0198	7696	1	1	0	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0199	7699	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0200	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0201	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0202	7697	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0203	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0204	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0205	7697	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0206	7698	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0207	7697	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	t0208	7696	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAB1_chr12_119663133_119686619	1/1	t0001	1407	285	38	49	159	10	27	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0002	1407	71	39	14	1	7	10	copy fasta	PRKAB1	chr12	119663133	119686619