JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCZ_chr1_2045411_2190395	0/0	t0008	607	1	1	0	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0009	607	1	1	0	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0010	607	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0011	607	1	0	0	1	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0012	607	1	0	0	1	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0013	607	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0014	608	1	0	0	1	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0015	608	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0016	607	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0017	607	1	1	0	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0018	607	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKD1_chr14_29571479_29932847	0/0	t0001	1095	90	31	16	34	1	8	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0002	1095	34	14	8	12	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0003	1095	14	2	2	10	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0004	1095	5	0	1	1	1	2	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0005	1095	3	1	2	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0006	1095	3	3	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0007	1095	2	2	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0008	1095	1	0	1	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0009	1095	1	0	0	1	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0010	1095	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0011	1095	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	t0012	1095	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD2_chr19_46669316_46722114	1/1	t0001	952	321	85	64	129	10	31	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0002	952	39	8	7	21	0	3	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0003	955	13	1	5	1	2	4	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0004	952	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0005	948	1	0	1	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0006	952	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0007	952	1	0	1	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	t0008	952	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD3_chr2_37245502_37329833	0/0	t0001	3495	69	3	11	54	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0002	3488	46	0	12	27	3	4	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0003	3488	45	6	6	31	0	2	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0004	3496	39	9	4	19	2	5	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	1/0	t0005	3484	26	2	12	5	1	5	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0006	3484	18	15	3	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/1	t0007	3488	12	1	6	0	4	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0008	3485	9	9	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0009	3486	9	5	0	4	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0010	3489	8	0	0	8	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0011	3498	8	1	1	5	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0012	3491	7	7	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0013	3496	6	0	6	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0014	3485	6	6	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0015	3496	5	4	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0016	3491	5	0	0	5	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0017	3485	5	5	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0018	3490	4	0	0	4	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0019	3484	4	3	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833