JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRTFDC1_chr10_24843614_24957606	1/0	t0002	1262	76	21	7	39	2	6	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/1	t0003	1262	65	0	24	28	3	9	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0004	1262	30	2	2	26	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0005	1262	19	15	4	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0006	1262	16	16	0	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0007	1262	10	10	0	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0008	1262	9	8	1	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0009	1262	3	3	0	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0010	1262	3	0	3	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0011	1262	2	1	1	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0012	1262	2	0	0	2	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0013	1262	2	0	0	2	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0014	1262	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0015	1262	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0016	1262	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0017	1262	1	0	1	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0018	1262	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	t0019	1262	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTG_chr15_55606544_55748152	0/0	t0001	8658	43	2	6	25	2	8	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/1	t0002	8659	24	1	18	0	1	3	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0003	8660	19	0	3	14	1	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0004	8660	15	2	3	4	2	4	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0005	8660	10	0	0	10	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0006	8658	5	0	3	2	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0007	8662	4	0	0	4	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0008	8657	4	0	2	2	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0009	8683	3	0	1	0	2	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0010	8681	3	1	2	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0011	8658	3	0	1	1	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0012	8692	3	0	1	0	0	2	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0013	8680	3	3	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0014	8658	3	0	0	3	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0015	8660	3	0	0	3	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0016	8658	3	0	2	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0017	8689	3	3	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0018	8660	2	0	0	2	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0019	8658	2	0	0	1	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0020	8669	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0021	8667	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0022	8678	2	0	2	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0023	8692	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0024	8690	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0025	8659	2	0	2	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0026	8664	2	0	0	2	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0027	8688	2	1	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0028	8682	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0029	8685	2	1	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0030	8687	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0031	8690	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0032	8668	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152