JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRTG_chr15_55606544_55748152	0/0	t0033	8694	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0034	8690	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0035	8674	2	0	0	0	0	2	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0036	8686	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0037	8662	2	0	2	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0038	8688	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0039	8649	2	2	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0040	8660	2	0	0	1	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0041	8662	2	0	0	2	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0042	8658	2	0	2	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0043	8658	2	0	0	0	0	2	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0044	8689	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0045	8687	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0046	8685	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0047	8681	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0048	8673	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0049	8689	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0050	8682	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0051	8661	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0052	8688	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0053	8686	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0054	8684	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0055	8678	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0056	8695	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0057	8691	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0058	8680	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0059	8706	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0060	8685	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0061	8693	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0062	8687	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0063	8693	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0064	8664	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0065	8666	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0066	8659	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0067	8696	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0068	8684	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0069	8680	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0070	8690	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0071	8686	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0072	8669	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0073	8665	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0074	8665	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0075	8660	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0076	8668	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0077	8658	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0078	8686	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0079	8716	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0080	8686	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0081	8658	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0082	8657	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152