JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRTG_chr15_55606544_55748152	0/0	t0083	8692	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0084	8660	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0085	8661	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0086	8659	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0087	8658	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0088	8658	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0089	8658	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0090	8659	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0091	8658	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0092	8679	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0093	8699	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0094	8695	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0095	8693	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	1/0	t0096	8690	1	0	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0097	8715	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0098	8669	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0099	8667	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0100	8664	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0101	8681	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0102	8684	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0103	8674	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0104	8689	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0105	8667	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0106	8691	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0107	8690	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0108	8687	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0109	8667	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0110	8659	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0111	8684	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0112	8687	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0113	8714	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0114	8687	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0115	8688	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0116	8649	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0117	8649	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0118	8649	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0119	8659	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0120	8692	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0121	8686	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0122	8669	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0123	8667	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	t0124	8661	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTN3_chr19_835999_853175	0/1	t0001	217	396	82	80	171	15	47	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	t0002	217	7	7	0	0	0	0	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	t0003	185	4	1	1	0	1	1	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	t0004	217	4	4	0	0	0	0	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	t0005	217	3	2	1	0	0	0	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	t0006	217	1	0	0	1	0	0	copy fasta	PRTN3	chr19	835999	853175
PRUNE1_chr1_151003449_151040713	1/1	t0001	1664	362	67	70	168	17	38	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0002	1665	17	14	1	1	0	1	copy fasta	PRUNE1	chr1	151003449	151040713