JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTOV1_chr19_49846159_49865742	0/0	t0008	647	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTP4A1_chr6_63567480_63588588	1/1	t0001	4100	217	46	51	79	11	28	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0002	4099	53	3	6	41	2	1	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0003	4101	10	0	0	10	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0004	4100	10	10	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0005	4100	5	0	0	5	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0006	4100	5	1	1	1	0	2	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0007	4100	5	0	3	0	0	2	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0008	4098	4	4	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0009	4100	3	3	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0010	4096	3	3	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0011	4101	3	0	0	3	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0012	4100	3	0	0	3	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0013	4100	3	3	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0014	4101	3	3	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0015	4100	2	2	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0016	4100	2	0	1	0	1	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0017	4100	2	1	1	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0018	4100	2	2	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0019	4100	2	2	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0020	4100	2	0	0	2	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0021	4100	2	0	0	0	0	2	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0022	4100	2	0	0	0	0	2	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0023	4100	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0024	4098	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0025	4100	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0026	4100	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0027	4100	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0028	4098	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0029	4100	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0030	4100	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0031	4100	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0032	4100	1	0	0	0	0	1	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0033	4100	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0034	4101	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0035	4100	1	0	0	0	0	1	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0036	4100	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0037	4100	1	0	0	0	0	1	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0038	4118	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	t0039	4099	1	0	1	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A2_chr1_31901421_31943368	0/0	t0001	3312	89	9	12	56	1	11	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0002	3357	9	1	0	6	2	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0003	3390	6	0	2	3	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0004	3372	5	1	1	3	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0005	3380	5	2	1	1	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0006	3388	5	0	2	1	2	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0007	3374	4	0	1	3	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0008	3376	4	1	2	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0009	3392	4	1	3	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0010	3369	4	1	0	1	1	1	copy fasta	PTP4A2	chr1	31901421	31943368