JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PUS7L_chr12_43713992_43763790	0/0	t0074	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0075	11464	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7_chr7_105451503_105527271	1/1	t0001	1540	264	60	48	121	7	26	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0002	1540	29	3	10	4	5	7	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0003	1540	19	15	2	0	2	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0004	1540	15	1	0	10	0	4	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0005	1540	4	4	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0006	1540	3	0	2	0	0	1	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0007	1540	2	2	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0008	1540	2	0	0	0	0	2	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0009	1540	2	2	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0010	1540	1	1	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0011	1540	1	1	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0012	1540	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0013	1540	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0014	1540	1	1	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0015	1540	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0016	1540	1	0	0	0	0	1	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0017	1540	1	0	0	0	0	1	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0018	1540	1	1	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	t0019	1540	1	1	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUSL1_chr1_1303597_1316677	1/1	t0001	346	345	90	64	136	12	41	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	t0002	346	2	1	0	0	0	1	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	t0003	346	2	0	0	2	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	t0004	346	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	t0005	346	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	t0006	346	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PVALB_chr22_36795703_36822035	0/0	t0001	218	214	28	37	117	8	24	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/1	t0002	218	205	64	43	69	8	20	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/0	t0003	218	2	0	2	0	0	0	copy fasta	PVALB	chr22	36795703	36822035
PVALEF_chr17_81160507_81188166	1/0	t0001	904	134	23	27	69	9	5	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/1	t0002	904	90	3	19	45	4	18	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0003	904	58	15	4	31	0	8	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0004	904	38	19	12	0	3	4	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0005	904	18	0	8	5	2	3	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0006	904	12	12	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0007	904	11	0	0	9	0	2	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0008	904	6	4	2	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0009	904	5	5	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0010	904	5	0	0	0	0	5	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0011	905	5	5	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0012	905	5	3	0	2	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0013	904	4	0	0	3	0	1	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0014	904	3	2	1	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0015	904	3	0	0	3	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0016	904	2	0	0	2	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0017	904	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0018	904	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0019	904	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0020	904	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166