JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB21_chr12_71749863_71805286	0/0	t0043	14876	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0044	14879	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0045	14880	2	0	0	1	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0046	14879	2	0	0	0	0	2	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0047	14879	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0048	14895	2	2	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0049	13453	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0050	13459	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0051	13449	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0052	13451	2	0	0	0	0	2	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0053	13451	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0054	13448	2	0	0	2	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0055	13445	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0056	13446	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0057	13455	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0058	13446	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0059	13446	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0060	14866	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0061	14880	1	0	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0062	13448	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0063	13447	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0064	13452	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0065	13460	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0066	13449	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0067	14860	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0068	14860	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0069	13438	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0070	14868	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0071	14868	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0072	14880	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0073	14878	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0074	14881	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0075	14881	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0076	14880	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0077	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0078	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0079	14881	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0080	14880	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0081	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0082	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0083	14872	1	0	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0084	14879	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0085	14878	1	0	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0086	14879	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0087	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0088	14881	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0089	14877	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0090	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0091	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0092	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286