JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB21_chr12_71749863_71805286	0/0	t0093	14881	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0094	14882	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0095	14877	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0096	14878	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0097	14879	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0098	14880	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0099	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0100	14881	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0101	14882	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0102	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0103	14881	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0104	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0105	14877	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0106	14876	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0107	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0108	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0109	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0110	14877	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0111	14878	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0112	14883	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0113	14881	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0114	14880	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0115	14879	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0116	14880	1	0	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0117	14877	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0118	14878	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0119	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0120	14879	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0121	14880	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0122	14881	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0123	14877	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0124	14878	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0125	14877	1	0	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0126	14878	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0127	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0128	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0129	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0130	14881	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0131	14881	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0132	14883	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0133	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0134	14879	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0135	14881	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0136	14880	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0137	14879	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0138	14878	1	0	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0139	14879	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0140	14894	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0141	14892	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0142	14880	1	1	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286