JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
RAB21_chr12_71749863_71805286	0/0	t0143	13448	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0144	13451	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0145	13451	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0146	13459	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0147	13462	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0148	13458	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0149	13455	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0150	13451	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0151	13453	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0152	13455	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0153	13455	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0154	13451	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0155	13451	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0156	13453	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0157	14901	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0158	14890	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0159	13455	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0160	13452	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0161	13450	1	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0162	14880	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0163	13450	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0164	13452	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0165	13450	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0166	13448	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0167	13459	1	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0168	13451	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0169	13451	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0170	13451	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0171	13450	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0172	13449	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0173	13449	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0174	13449	1	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0175	13449	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0176	13455	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0177	13454	1	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0178	13455	1	0	1	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0179	13457	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0180	13455	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0181	13450	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0182	13448	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0183	13449	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0184	13450	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0185	13451	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0186	13453	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0187	13450	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0188	13449	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0189	13441	1	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0190	14876	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0191	14877	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	t0192	14877	1	0	0	1	0	copy fasta	RAB21	chr12	71749863	71805286