Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN2L_chr16_28817999_28842232	0/0	t0002	1229	29	0	1	28	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0003	1230	4	0	1	2	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0004	1229	4	0	1	0	0	3	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0005	1229	3	0	1	0	0	2	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0006	1229	2	2	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0007	1180	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0008	1230	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0009	1222	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0010	1229	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0011	1229	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0012	1229	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0013	1229	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0014	1229	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0015	1229	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	t0016	1229	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2_chr12_111447214_111604315	0/0	t0001	879	156	31	15	98	2	10	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/1	t0002	880	62	8	16	23	2	12	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	1/0	t0003	880	48	31	10	5	0	1	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	t0004	879	14	0	1	9	0	4	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	t0005	881	7	7	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	t0006	879	7	4	0	0	0	3	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	t0007	879	3	0	0	3	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	t0008	880	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN3L_chrX_13313647_13325053	1/1	t0001	340	294	63	54	134	9	32	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	t0002	340	19	12	6	0	1	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	t0003	340	2	0	2	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	t0004	338	1	1	0	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	t0005	340	1	0	0	0	1	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3_chr14_92053552_92111582	1/0	t0001	5799	55	2	5	39	3	5	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0002	5801	40	4	4	22	3	7	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0003	5799	25	2	16	0	3	4	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0004	5801	22	0	2	14	0	6	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0005	5799	20	0	0	17	0	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/1	t0006	5796	13	5	5	0	0	2	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0007	5801	12	0	6	4	0	2	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0008	5801	11	0	4	7	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0009	5801	10	5	0	4	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0010	5799	10	1	1	7	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0011	5800	7	1	1	3	0	2	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0012	5801	6	0	0	6	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0013	5800	5	5	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0014	5799	5	0	2	3	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0015	5801	5	0	3	0	2	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0016	5801	5	0	1	4	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0017	5799	5	0	4	0	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0018	5803	5	1	4	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0019	5797	4	0	1	0	0	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0020	5799	4	0	2	0	1	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0021	5800	4	4	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0022	5799	4	0	0	4	0	0	copy fasta	ATXN3	chr14	92053552	92111582