Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN3_chr14_92053552_92111582	0/0	t0073	5798	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0074	5796	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0075	5801	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0076	5797	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0077	5801	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0078	5799	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0079	5802	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0080	5873	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0081	5863	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0082	5874	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0083	5866	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0084	5797	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0085	5797	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0086	5800	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0087	5800	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0088	5800	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0089	5799	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0090	5802	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0091	5801	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0092	5799	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0093	5797	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0094	5799	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0095	5799	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0096	5799	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0097	5800	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0098	5799	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0099	5801	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0100	5795	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0101	5798	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0102	5802	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0103	5799	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0104	5796	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0105	5798	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0106	5799	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0107	5799	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0108	5799	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0109	5795	1	0	0	0	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0110	5797	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0111	5798	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0112	5800	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0113	5801	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0114	5800	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0115	5801	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0116	5799	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0117	5799	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0118	5798	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0119	5799	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	t0120	5795	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN7L1_chr7_105599772_105881599	0/0	t0001	3124	30	7	4	13	2	4	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0002	3126	23	0	3	19	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599