JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD51AP2_chr2_17505579_17523440	1/1	t0002	251	157	79	30	32	4	10	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51B_chr14_67814779_68483093	0/0	t0001	507	73	47	12	6	2	6	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	t0002	507	5	4	1	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	t0003	507	4	4	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	t0004	507	1	0	1	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	t0005	507	1	1	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51C_chr17_58687602_58740611	1/1	t0001	1432	173	45	32	76	5	13	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0002	1433	49	18	13	13	0	5	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0003	1431	44	8	8	21	3	4	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0004	1431	26	10	6	2	3	5	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0005	1432	16	2	4	8	0	2	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0006	1430	8	0	7	0	1	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0007	1432	4	0	0	0	0	4	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0008	1432	3	0	0	3	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0009	1433	2	0	0	0	0	2	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0010	1430	2	2	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0011	1432	1	0	0	0	0	1	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0012	1433	1	0	0	1	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	t0013	1433	1	1	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51D_chr17_35087221_35124860	0/1	t0001	8979	72	7	24	21	5	14	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0002	8976	72	3	21	35	5	8	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0003	8978	46	10	7	27	0	2	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0004	8979	34	9	3	21	1	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0005	8978	21	0	0	20	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0006	8978	17	0	4	5	1	7	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0007	8978	14	0	0	14	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0008	8978	9	2	1	4	0	2	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0009	8976	8	0	0	8	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0010	8980	8	1	1	4	0	2	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0011	8979	6	0	5	0	1	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0012	8979	6	2	0	4	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0013	8978	6	4	2	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0014	8978	5	5	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0015	8978	4	4	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0016	8980	4	4	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0017	8981	4	4	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0018	8979	4	4	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0019	8979	3	3	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0020	8978	3	2	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0021	8980	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0022	8979	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0023	8982	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0024	8980	2	0	1	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0025	8978	2	0	0	2	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0026	8979	2	0	0	2	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0027	8981	2	0	0	2	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0028	8965	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0029	8978	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0030	8976	2	0	1	0	1	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0031	8976	2	0	0	2	0	0	copy fasta	RAD51D	chr17	35087221	35124860