JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD51D_chr17_35087221_35124860	0/0	t0032	8978	2	0	0	0	0	2	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0033	8979	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0034	8978	2	2	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0035	8978	2	0	0	2	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0036	8980	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0037	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0038	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0039	8976	1	0	0	0	1	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0040	8980	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0041	8979	1	0	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0042	8978	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0043	8979	1	0	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0044	8977	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0045	8979	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0046	8976	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0047	8977	1	0	0	0	1	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0048	8978	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0049	8978	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0050	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0051	8978	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0052	8977	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	1/0	t0053	8980	1	0	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0054	8979	1	0	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0055	8976	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0056	8975	1	0	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0057	8977	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0058	8978	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0059	8976	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0060	8979	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0061	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0062	8980	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0063	8978	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0064	9000	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0065	8977	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0066	8978	1	0	0	0	0	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0067	8975	1	0	1	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0068	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0069	8979	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0070	8976	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0071	8976	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0072	8978	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0073	8978	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0074	8979	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	t0075	8978	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51_chr15_40690174_40737340	0/0	t0001	1417	209	7	47	119	6	30	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0002	1417	61	10	17	19	5	10	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0003	1417	34	4	3	22	0	5	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0004	1417	22	21	1	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0005	1417	12	12	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0006	1417	11	10	1	0	0	0	copy fasta	RAD51	chr15	40690174	40737340