JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAET1E_chr6_149878179_149903113	0/0	t0063	5733	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0064	5732	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0065	5732	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0066	5732	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1G_chr6_149911878_149928121	1/1	t0001	146	284	58	70	105	13	36	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	t0002	131	158	24	14	103	3	14	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	t0003	131	14	14	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1L_chr6_150013334_150030532	1/0	t0001	606	298	55	43	160	11	28	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/1	t0002	606	136	20	27	61	6	21	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0003	606	13	12	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0004	606	6	6	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0005	606	5	0	3	0	1	1	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0006	606	3	0	3	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0007	606	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0008	606	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0009	606	2	1	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	t0010	606	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAF1_chr3_12578601_12669117	1/1	t0001	1245	174	52	35	59	6	20	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0002	1245	59	22	22	4	5	6	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0003	1241	9	2	5	0	1	1	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0004	1245	6	5	1	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0005	1245	6	6	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0006	1245	2	2	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0007	1245	1	1	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0008	1245	1	0	0	0	0	1	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0009	1245	1	1	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0010	1245	1	0	1	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0011	1273	1	1	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	t0012	1245	1	0	0	1	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAG1_chr11_36563007_36584762	0/1	t0001	3457	184	44	23	94	2	20	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	1/0	t0002	3457	125	17	35	44	9	19	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0003	3459	24	13	8	0	3	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0004	3456	9	0	0	8	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0005	3453	7	6	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0006	3457	7	7	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0007	3457	6	0	0	6	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0008	3457	4	0	0	4	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0009	3457	3	3	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0010	3458	3	0	1	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0011	3458	2	1	0	1	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0012	3457	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0013	3457	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0014	3457	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0015	3458	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0016	3456	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0017	3457	1	0	0	1	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0018	3457	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0019	3458	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0020	3457	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0021	3459	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762