JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAG1_chr11_36563007_36584762	0/0	t0022	3457	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0023	3457	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0024	3457	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0025	3457	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	t0026	3458	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG2_chr11_36586943_36603236	0/1	t0001	805	224	45	28	128	2	20	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	1/0	t0002	805	141	18	40	52	9	21	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	t0003	805	42	19	10	9	3	1	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	t0004	805	10	10	0	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	t0005	805	2	2	0	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	t0006	805	1	0	0	1	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAI14_chr5_34651328_34837612	1/0	t0001	2044	108	38	17	41	5	6	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/1	t0002	2044	69	4	15	31	3	15	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0003	2044	36	25	7	2	1	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0004	2044	17	10	4	0	2	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0005	2044	5	0	1	1	0	3	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0006	2044	4	4	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0007	2044	3	3	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0008	2044	2	0	1	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0009	2044	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0010	2044	1	0	0	0	1	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0011	2044	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0012	2044	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0013	2044	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0014	2044	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0015	2044	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0016	2044	1	0	1	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0017	2044	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	t0018	2044	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI1_chr17_17676458_17816453	0/1	t0001	1955	138	42	25	53	3	14	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0002	1958	51	8	25	9	4	5	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0003	1954	21	14	4	1	1	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	1/0	t0004	1957	15	3	5	2	4	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0005	1956	8	7	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0006	1958	4	3	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0007	1955	3	3	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0008	1954	2	2	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0009	1956	2	2	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0010	1956	2	2	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0011	1954	1	0	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0012	1955	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0013	1958	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0014	1944	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0015	1954	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	t0016	1955	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI2_chrX_17795049_17866298	1/1	t0001	595	175	49	31	68	5	20	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	t0002	595	1	1	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	t0003	595	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	t0004	595	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	t0005	594	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298