JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RANBP3_chr19_5911139_5983140	0/0	t0007	1530	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0008	1530	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0009	1530	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0010	1530	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0011	1530	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0012	1530	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0013	1530	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP6_chr9_6006025_6020624	1/1	t0001	1283	284	66	46	133	11	26	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0002	1283	81	8	22	38	3	10	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0003	1283	33	14	3	9	0	7	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0004	1283	4	0	0	4	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0005	1283	3	0	2	0	0	1	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0006	1283	2	0	0	2	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0007	1283	2	0	0	2	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0008	1283	2	2	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0009	1283	1	0	1	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0010	1283	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	t0011	1283	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP9_chr6_13616498_13716835	1/0	t0001	1195	261	80	51	98	11	20	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/1	t0002	1196	78	4	13	47	3	10	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0003	1195	6	0	4	1	0	1	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0004	1195	6	1	3	0	0	2	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0005	1195	3	0	0	3	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0006	1195	2	1	1	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0007	1195	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0008	1195	1	0	0	0	0	1	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0009	1195	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	t0010	1196	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANGAP1_chr22_41239779_41291187	1/0	t0001	2065	151	41	9	93	1	6	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/1	t0002	2065	43	3	21	5	3	10	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0003	2065	38	1	2	29	2	4	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0004	2065	36	18	10	1	2	5	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0005	2065	28	4	3	14	2	5	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0006	2065	12	1	8	3	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0007	2065	7	6	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0008	2065	6	0	2	0	2	2	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0009	2065	5	0	1	0	1	3	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0010	2065	5	5	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0011	2065	5	4	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0012	2065	2	0	0	1	1	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0013	2065	2	0	0	0	0	2	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0014	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0015	2065	1	0	0	0	0	1	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0016	2065	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0017	2065	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0018	2065	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0019	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0020	2065	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0021	2065	1	0	0	0	0	1	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0022	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187