JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCSD1_chr1_167625232_167713696	0/0	t0019	4182	3	1	1	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0020	4193	2	1	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0021	4197	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0022	4197	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0023	4193	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	1/0	t0024	4193	2	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0025	4197	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0026	4193	2	1	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0027	4193	2	0	0	2	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0028	4197	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0029	4192	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0030	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0031	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0032	4181	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0033	4182	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0034	4181	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0035	4179	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0036	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0037	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0038	4193	1	0	0	0	0	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0039	4193	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0040	4193	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0041	4197	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0042	4197	1	0	0	0	0	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0043	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0044	4193	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0045	4193	1	0	0	0	0	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0046	4197	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0047	4181	1	0	0	0	1	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0048	4182	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0049	4181	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0050	4193	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0051	4197	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0052	4193	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0053	4181	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCVRN_chr17_9891320_9910271	1/1	t0001	1867	179	21	46	81	8	21	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0002	1867	85	2	17	53	1	12	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0003	1867	58	4	4	42	3	5	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0004	1864	16	1	1	12	0	2	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0005	1867	15	3	0	10	0	2	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0006	1864	14	4	0	9	0	1	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0007	1864	9	9	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0008	1864	8	8	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0009	1875	7	0	0	7	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0010	1870	7	0	4	0	1	2	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0011	1867	7	7	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0012	1867	7	7	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0013	1867	6	2	4	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0014	1872	5	0	4	0	1	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0015	1864	4	4	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271