JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGP1_chr9_35744287_35763585	0/0	t0037	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0038	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0039	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0040	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0041	5853	1	0	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0042	5852	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0043	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0044	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0045	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0046	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0047	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0048	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0049	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0050	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGPD1_chr2_86937118_87018976	0/0	t0001	1549	63	3	17	29	6	8	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0002	1552	11	0	3	5	2	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0003	1549	9	3	1	2	0	3	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0004	1552	4	0	2	2	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0005	1552	2	0	1	0	1	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0006	1547	2	2	0	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0007	1549	2	0	1	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0008	1549	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0009	1552	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0010	1552	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0011	1549	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0012	1552	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0013	1549	1	0	0	0	1	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0014	1547	1	0	1	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0015	1552	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	t0016	1547	1	0	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD2_chr2_87750960_87830796	0/0	t0001	1500	126	41	36	25	9	15	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0002	1497	20	1	6	9	0	4	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0003	1495	4	0	2	2	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0004	1497	4	0	0	1	0	3	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0005	1500	4	0	3	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0006	1500	3	3	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0007	1497	2	1	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0008	1500	2	2	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0009	1497	2	2	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0010	1500	2	0	0	2	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0011	1500	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0012	1500	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0013	1500	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0014	1497	1	0	0	1	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0015	1500	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0016	1497	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	t0017	1500	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD3_chr2_106398406_106473413	0/0	t0001	1939	60	4	15	38	0	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0002	1939	45	2	15	13	4	11	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0003	1939	41	2	7	24	3	5	copy fasta	RGPD3	chr2	106398406	106473413