JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGPD3_chr2_106398406_106473413	0/0	t0004	1939	26	0	4	22	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	1/1	t0005	1939	21	1	10	0	5	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0006	1939	18	18	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0007	1939	17	0	1	16	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0008	1939	14	5	1	4	1	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0009	1939	8	2	3	0	0	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0010	1937	8	0	3	1	2	2	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0011	1939	7	7	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0012	1939	7	0	0	7	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0013	1939	6	0	2	3	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0014	1939	6	2	3	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0015	1939	5	4	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0016	1939	4	4	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0017	1939	4	4	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0018	1939	4	0	2	0	1	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0019	1939	4	1	2	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0020	1939	4	0	0	4	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0021	1939	3	3	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0022	1939	3	3	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0023	1939	3	0	0	0	0	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0024	1939	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0025	1939	2	0	2	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0026	1939	2	0	0	1	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0027	1939	2	2	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0028	1939	2	1	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0029	1939	2	2	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0030	1939	2	2	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0031	1939	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0032	1939	2	2	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0033	1939	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0034	1939	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0035	126	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0036	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0037	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0038	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0039	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0040	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0041	1939	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0042	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0043	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0044	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0045	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0046	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0047	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0048	1937	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0049	1937	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0050	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0051	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0052	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0053	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413