JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGPD3_chr2_106398406_106473413	0/0	t0054	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0055	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0056	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0057	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0058	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0059	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0060	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0061	1937	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0062	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0063	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0064	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0065	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0066	1939	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0067	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0068	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0069	1939	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0070	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0071	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0072	1939	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0073	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0074	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0075	1939	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0076	1939	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	t0077	1939	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD4_chr2_107821892_107897544	1/0	t0001	1936	117	2	24	85	3	2	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0002	1936	80	12	7	43	3	15	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/1	t0003	1936	58	9	17	15	3	13	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0004	1936	27	6	12	5	1	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0005	1936	12	11	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0006	1936	11	1	4	0	1	5	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0007	1936	5	0	0	4	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0008	1936	5	5	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0009	1936	4	4	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0010	1936	4	0	2	0	1	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0011	1936	3	3	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0012	1936	3	3	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0013	1936	3	2	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0014	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0015	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0016	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0017	1936	2	1	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0018	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0019	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0020	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0021	1936	2	0	0	2	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0022	1936	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0023	1936	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0024	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0025	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0026	1936	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544