JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGPD4_chr2_107821892_107897544	0/0	t0027	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0028	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0029	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0030	1936	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0031	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0032	1936	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0033	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0034	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0035	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0036	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0037	1936	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0038	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0039	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0040	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0041	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0042	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0043	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0044	1936	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0045	1936	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	t0046	1936	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD5_chr2_109789305_109862705	0/0	t0001	1971	8	5	0	2	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0002	1971	7	1	1	3	2	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0003	1971	7	1	1	2	3	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0004	1971	2	2	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0005	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0006	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0007	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0008	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0009	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0010	1971	1	0	1	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0011	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0012	1971	1	0	0	1	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0013	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0014	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0015	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0016	1971	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0017	1971	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0018	1971	1	0	1	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0019	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	t0020	1971	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD6_chr2_110508802_110582222	0/0	t0001	2008	2	0	2	0	0	0	copy fasta	RGPD6	chr2	110508802	110582222
RGPD8_chr2_112363369_112438645	0/0	t0001	2002	69	6	15	35	4	9	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0002	2002	60	35	10	11	1	3	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0003	2002	42	2	7	31	0	2	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0004	2002	16	0	0	16	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0005	2002	11	7	3	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0006	2002	11	5	3	0	2	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0007	2002	9	0	3	6	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0008	2002	5	1	2	0	0	2	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0009	2002	5	0	0	5	0	0	copy fasta	RGPD8	chr2	112363369	112438645