JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGPD8_chr2_112363369_112438645	0/0	t0010	2002	3	3	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0011	2002	3	3	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0012	2002	2	1	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0013	2002	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0014	2002	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0015	2002	2	0	0	0	1	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0016	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0017	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0018	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0019	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0020	2002	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0021	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0022	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0023	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0024	2002	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0025	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0026	2002	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	t0027	2002	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGR_chr10_84240053_84264960	1/0	t0001	1360	216	23	41	117	7	27	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0002	1362	72	50	6	10	1	5	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/1	t0003	1362	63	12	21	19	4	6	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0004	1363	51	11	8	25	1	6	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0005	1362	15	0	4	5	3	3	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0006	1360	2	0	0	2	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0007	1363	1	0	0	1	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0008	1360	1	1	0	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0009	1360	1	0	0	1	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0010	1360	1	0	0	1	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0011	1360	1	1	0	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0012	1360	1	0	0	1	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	t0013	1363	1	0	0	0	0	1	copy fasta	RGR	chr10	84240053	84264960
RGS10_chr10_119494817_119547719	1/0	t0001	378	364	69	64	170	12	48	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0002	378	14	14	0	0	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0003	378	9	8	1	0	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0004	378	3	3	0	0	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0005	378	1	0	0	1	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0006	378	1	0	1	0	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	t0007	378	1	0	0	1	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS11_chr16_263307_280944	0/1	t0001	997	255	23	54	125	15	37	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0002	997	145	44	21	66	3	11	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0003	997	24	0	1	23	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0004	997	7	6	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0005	997	6	6	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0006	997	6	6	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0007	997	4	3	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0008	997	2	2	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0009	997	2	2	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0010	997	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0011	997	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	t0012	997	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944