Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GALT2_chr1_193173730_193191613	0/0	t0011	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0012	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0013	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0014	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0015	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0016	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0017	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0018	2280	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0019	2280	1	0	0	0	0	1	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT4_chr6_33272123_33283825	0/1	t0001	567	310	86	58	126	13	26	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0002	567	41	4	13	17	1	6	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0003	567	5	4	1	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0004	567	4	0	0	4	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0005	567	1	1	0	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0006	567	1	1	0	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	t0007	567	1	0	0	1	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT5_chr21_39607940_39678137	0/0	t0001	12165	45	1	8	30	3	3	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/1	t0002	12165	33	6	13	3	2	8	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0003	12167	22	0	1	16	3	2	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	1/0	t0004	12165	17	2	6	5	0	3	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0005	12165	13	1	3	5	1	3	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0006	12167	10	0	2	8	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0007	12165	9	8	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0008	12165	9	0	0	9	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0009	12167	5	0	2	2	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0010	12165	4	0	0	4	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0011	12165	4	0	0	4	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0012	12165	4	1	2	0	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0013	12165	4	0	3	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0014	12167	4	0	0	0	0	4	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0015	12167	4	0	0	3	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0016	12164	4	3	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0017	12165	3	0	1	1	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0018	12165	3	0	0	3	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0019	12158	3	3	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0020	12165	3	3	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0021	12169	3	3	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0022	12167	3	0	0	3	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0023	12165	3	2	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0024	12167	3	0	3	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0025	12169	3	1	0	0	2	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0026	12165	3	3	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0027	12165	2	0	0	2	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0028	12165	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0029	12165	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0030	12163	2	1	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0031	12165	2	0	2	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0032	12171	2	0	2	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0033	12165	2	0	0	0	0	2	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0034	12165	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137