Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GALT5_chr21_39607940_39678137	0/0	t0035	12165	2	0	0	0	0	2	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0036	12169	2	0	0	2	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0037	12165	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0038	12165	2	1	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0039	12165	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0040	12171	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0041	12165	2	0	0	2	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0042	12167	2	0	0	2	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0043	12164	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0044	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0045	12167	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0046	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0047	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0048	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0049	12167	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0050	12167	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0051	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0052	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0053	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0054	12165	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0055	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0056	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0057	12163	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0058	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0059	12173	1	0	0	0	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0060	12165	1	0	0	0	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0061	12165	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0062	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0063	12165	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0064	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0065	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0066	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0067	12167	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0068	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0069	12167	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0070	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0071	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0072	12173	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0073	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0074	12167	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0075	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0076	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0077	12163	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0078	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0079	12158	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0080	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0081	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0082	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0083	12167	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0084	12167	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137