Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GALT5_chr21_39607940_39678137	0/0	t0085	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0086	12169	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0087	12167	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0088	12167	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0089	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0090	12170	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0091	12163	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0092	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0093	12112	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0094	12167	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0095	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0096	12167	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0097	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0098	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0099	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0100	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0101	12165	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0102	12167	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0103	12165	1	0	0	1	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0104	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0105	12165	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0106	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0107	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0108	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0109	12166	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0110	12166	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0111	12163	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0112	12161	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0113	12164	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0114	12164	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0115	12171	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0116	12167	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0117	12165	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0118	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0119	12171	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0120	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0121	12171	1	0	1	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0122	12171	1	0	0	0	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0123	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	t0124	12165	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT6_chr1_1227237_1240041	1/1	t0001	1816	324	74	61	140	12	35	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0002	1816	7	6	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0003	1816	5	4	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0004	1816	5	0	0	5	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0005	1816	2	1	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0006	1816	2	2	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0007	1816	2	2	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0008	1816	2	0	0	0	1	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0009	1816	1	0	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0010	1805	1	0	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041